Robustness of phylogenetic inference based on minimum evolution

DOI10.1007/S11538-010-9510-YMaRDI QIDQ611949zbMATH OpenOpenAlexWikidataFDO

Authors Fabio Pardi, Sylvain Guillemot, O. Gascuel

Publication date 15 December 2010

Published in Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://hal-lirmm.ccsd.cnrs.fr/lirmm-00511779

zbMATH Keywords

least squaresphylogeneticsdistance methodsminimum evolutionsafety radius

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15)

Recommendations

• Minimum evolution using ordinary least-squares is less robust than neighbor-joining
• The minimum evolution distance-based approach to phylogenetic inference
• Robustness of Greedy Type Minimum Evolution Algorithms
• On the consistency of the minimum evolution principle of phylogenetic inference
• Optimality of the neighbor joining algorithm and faces of the balanced minimum evolution polytope

Cites work

• scientific article; zbMATH DE number 1945176 (Why is no real title available?)
• Combinatorics of least-squares trees
• Consistent formulas for estimating the total lengths of trees
• Cyclic permutations and evolutionary trees
• Minimum evolution using ordinary least-squares is less robust than neighbor-joining
• Performance analysis of hierarchical clustering algorithms
• The minimum evolution distance-based approach to phylogenetic inference
• The performance of neighbor-joining methods of phylogenetic reconstruction

Cited in

(11)

• Robustness of Greedy Type Minimum Evolution Algorithms
• A tutorial on the balanced minimum evolution problem
• scientific article; zbMATH DE number 1945176 (Why is no real title available?)
• On the consistency of the minimum evolution principle of phylogenetic inference
• Tree fitting: Topological recognition from ordinary least-squares edge length estimates
• A massively parallel branch-\&-bound algorithm for the balanced minimum evolution problem
• scientific article; zbMATH DE number 6851886 (Why is no real title available?)
• Minimum evolution using ordinary least-squares is less robust than neighbor-joining
• The minimum evolution distance-based approach to phylogenetic inference
• A `stochastic safety radius' for distance-based tree reconstruction
• UPGMA and the normalized equidistant minimum evolution problem

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