Rtwalk
From MaRDI portal
Description
Implements the t-walk algorithm, a general-purpose, self-adjusting Markov Chain Monte Carlo (MCMC) sampler for continuous distributions as described by Christen & Fox (2010) <doi:10.1214/10-BA603>. The t-walk requires no tuning and is robust for a wide range of target distributions, including high-dimensional and multimodal problems. The sampler is implemented in C++ and validated against a pure R reference implementation of the published algorithm. The package supports reproducible parallel chains, continuation of runs, single transitions for hybrid samplers, and convergence diagnostics following Vehtari et al. (2021) <doi:10.1214/20-BA1221>.
Cited in
(50)- CosmoSIS
- MCMC
- Bayesian analysis of \(^{210}\mathrm{Pb}\) dating
- Objective priors for the number of degrees of freedom of a multivariate t distribution and the t-copula
- Ensemble preconditioning for Markov chain Monte Carlo simulation
- Towards uncertainty quantification and inference in the stochastic SIR epidemic model
- Inference for grouped data with a truncated skew-Laplace distribution
- Weak and TV consistency in Bayesian uncertainty quantification using disintegration
- Modeling the transmission dynamics and the impact of the control interventions for the COVID-19 epidemic outbreak
- Transmission dynamics of acute respiratory diseases in a population structured by age
- Bayesian deconvolution and quantification of metabolites from J-resolved NMR spectroscopy
- Relevant parameter changes in structural break models
- Modeling behavioral change and COVID-19 containment in Mexico: a trade-off between lockdown and compliance
- Systematic statistical analysis of microbial data from dilution series
- Localization for MCMC: sampling high-dimensional posterior distributions with local structure
- Iterative construction of Gaussian process surrogate models for Bayesian inference
- Approximation and sampling of multivariate probability distributions in the tensor train decomposition
- Optimal sequential Bayesian analysis for degradation tests
- t-walk
- Flexible paleoclimate age-depth models using an autoregressive gamma process
- A general purpose sampling algorithm for continuous distributions (the t-walk)
- deBInfer
- Thermal uncertainty analysis of a single particle model for a lithium-ion cell
- Modeling time-varying parameters using artificial neural networks: a GARCH illustration
- Advances in the sequential design of computer experiments based on active learning
- A stochastic Newton MCMC method for large-scale statistical inverse problems with application to seismic inversion
- Parameter and state model reduction for large-scale statistical inverse problems
- Bayesian analysis of ODEs: solver optimal accuracy and Bayes factors
- emcee
- ACOR
- libspatialSEIR
- RMHMC
- EnsembleQN
- MSGARCH
- SPLIDA
- BATMAN
- Fast Markov chain Monte Carlo sampling for sparse Bayesian inference in high-dimensional inverse problems using L1-type priors
- Estimating a pressure dependent thermal conductivity coefficient with applications in food technology
- A model on bacterial resistance considering a generalized law of mass action for plasmid replication
- Bayesian estimation and uncertainty quantification in models of urea hydrolysis byE. colibiofilms
- Sampling hyperparameters in hierarchical models: Improving on Gibbs for high-dimensional latent fields and large datasets
- Ensemble Markov chain Monte Carlo with teleporting walkers
- Flexible objective Bayesian linear regression with applications in survival analysis
- Letter to the editor: On the use of improper priors for the shape parameters of asymmetric exponential power models
- BioMagResBank
- SpinCouple
- Dolphin
- Nmrglue
- A general science-based framework for dynamical spatio-temporal models
- Bayesian modelling of skewness and kurtosis with two-piece scale and shape distributions
This page was built for software: Rtwalk
