SPACO

Last update 24 August 2026

Copyright license MIT license, File License

Software version identifier PACKAGES.rds, 1.0.0, 1.0.1, 1.0.2, 1.0.3

Description

Spatial components offer tools for dimension reduction and spatially variable gene detection for high dimensional spatial transcriptomics data. Construction of a projection onto low-dimensional feature space of spatially dependent metagenes offers pre-processing to clustering, testing for spatial variability and denoising of spatial expression patterns. For more details, see Koehler et al. (2026) <doi:10.1093/bioinformatics/btag052>.

Cites work

A spectral dimension reduction technique that improves pattern detection in multivariate spatial data

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