Sequencing by hybridization with errors: handling longer sequences

DOI10.1016/J.TCS.2004.10.026MaRDI QIDQ1770409zbMATH OpenOpenAlexFDO

Authors Dekel Tsur

Publication date 6 April 2005

Published in Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.tcs.2004.10.026

zbMATH Keywords

Probabilistic analysisSequencing by hybridization

Mathematics Subject Classification ID

Combinatorial probability (60C05) Analysis of algorithms (68W40) Protein sequences, DNA sequences (92D20)

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Cites work

• Euler circuits and DNA sequencing by hybridization
• Hybrid genetic algorithm for DNA sequencing with errors
• On finding minimal length superstrings
• Tabu search for DNA sequencing with false negatives and false positives

Cited in

(11)

• Inferring a DNA sequence from erroneous copies
• Sequencing by hybridization in few rounds
• A greedy algorithm for the DNA sequencing by hybridization with positive and negative errors and information about repetitions
• New Error Tolerant Method for Search of Long Repeats in DNA Sequences
• scientific article; zbMATH DE number 1945178 (Why is no real title available?)
• scientific article; zbMATH DE number 1796954 (Why is no real title available?)
• scientific article; zbMATH DE number 1932360 (Why is no real title available?)
• An integer programming approach to DNA sequence assembly
• Restricting SBH ambiguity via restriction enzymes
• An optimization approach to the reconstruction of positional DNA sequencing by hybridization with errors
• Dealing with repetitions in sequencing by hybridization

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