seriation

MaRDI QIDQ20219swMATHCRANFDO

Authors Michael Hahsler, Kurt Hornik, Christian Buchta

Last update 12 December 2023

Copyright license GNU General Public License, version 3.0

Software version identifier 1.4.2, 0.1-1, 0.1-3, 0.1-4, 0.1-5, 0.1-6, 1.0-0, 1.0-1, 1.0-2, 1.0-3, 1.0-4, 1.0-5, 1.0-6, 1.0-7, 1.0-8, 1.0-9, 1.0-10, 1.0-11, 1.0-12, 1.0-13, 1.0-14, 1.1-0, 1.1-1, 1.1-2, 1.1-3, 1.2-0, 1.2-1, 1.2-2, 1.2-3, 1.2-5, 1.2-6, 1.2-7, 1.2-8, 1.2-9, 1.3.0, 1.3.1, 1.3.2, 1.3.3, 1.3.4, 1.3.5, 1.3.6, 1.4.0, 1.4.1, 1.5.0, 1.5.1, 1.5.2, 1.5.3, 1.5.4

Official website http://cran.r-project.org/web/packages/seriation/index.html

Source code repository https://github.com/cran/seriation

Description

Infrastructure for ordering objects with an implementation of several seriation/sequencing/ordination techniques to reorder matrices, dissimilarity matrices, and dendrograms. Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT). Hahsler et al (2008) <doi:10.18637/jss.v025.i03>.

Cites work

• Getting Things in Order: An Introduction to theRPackageseriation

Cited in

(47)

• adepro
• elaborator
• treeheatr
• bivrp
• ElliptCopulas
• DIVCLUS-T
• ClusteredMutations
• An experimental comparison of seriation methods for one-mode two-way data
• Two-way incremental seriation in the temporal domain with three-dimensional visualization: making sense of evolving high-dimensional datasets
• arulesViz
• Seriation using tree-penalized path length
• ThemeRiver
• A multi-scale seriation algorithm for clustering sparse imbalanced data: application to spike sorting
• SPMF
• The seriation problem in the presence of a double Fiedler value
• heatmaply
• corrr
• seqHMM
• bivpois
• TSP
• fechner
• PQSER
• PermutMatrix
• DendSer
• ClickClust
• WeightedCluster
• relations
• VxInsight
• GAP
• zenplots
• ROCKET
• Visualizing Variable Importance and Variable Interaction Effects in Machine Learning Models
• Bivariate Residual Plots With Simulation Polygons
• wdm
• Convex biclustering
• Similarity-first search: a new algorithm with application to Robinsonian matrix recognition
• An optimization parameter for seriation of noisy data
• An approximation algorithm for \(\ell_{\infty}\) fitting Robinson structures to distances
• Seriation in the presence of errors: a factor 16 approximation algorithm for \(l_{\infty }\)-fitting Robinson structures to distances
• baizer
• Continuation methods for approximate large scale object sequencing
• \texttt{PQser:} a Matlab package for spectral seriation
• Discovering bands from graphs
• MEDseq
• RMaCzek
• GAP: a graphical environment for matrix visualization and cluster analysis
• Quantile map: simultaneous visualization of patterns in many distributions with application to tandem mass spectrometry

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