Several biplot methods applied to gene expression data

DOI10.1016/J.JSPI.2007.06.019MaRDI QIDQ2475736zbMATH OpenOpenAlexFDO

Authors Mira Park, Jae Won Lee, JungBok Lee, Seuck Heun Song

Publication date 11 March 2008

Published in Journal of Statistical Planning and Inference (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jspi.2007.06.019

zbMATH Keywords

factor analysiscorrespondence analysismultidimensional scalingprincipal components analysisgene expression databiplotsupplementary data

Mathematics Subject Classification ID

Factor analysis and principal components; correspondence analysis (62H25) Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)

Recommendations

• Visualisation of Gene Expression Data - the GE-biplot, the Chip-plot and the Gene-plot
• Logistic biplots
• Visualization of ``high \(p\) small \(n\) data
• scientific article; zbMATH DE number 918093
• Spline-based nonlinear biplots

Cites work

• scientific article; zbMATH DE number 4076355 (Why is no real title available?)
• scientific article; zbMATH DE number 3673370 (Why is no real title available?)
• scientific article; zbMATH DE number 918093 (Why is no real title available?)
• Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data
• Significance analysis of microarrays applied to the ionizing radiation response
• The Geometric Interpretation of Correspondence Analysis
• The biplot graphic display of matrices with application to principal component analysis

Cited in

(9)

• Visualization of ``high \(p\) small \(n\) data
• A new biplot procedure with joint classification of objects and variables by fuzzy c-means clustering
• Graphical Exploration of Gene Expression Data: A Comparative Study of Three Multivariate Methods
• Dandelion plot: a method for the visualization of R-mode exploratory factor analyses
• Logistic biplots
• Semantic signature: comparative interpretation of gene expression on a semantic space
• Visualisation of Gene Expression Data - the GE-biplot, the Chip-plot and the Gene-plot
• A method for visual identification of small sample subgroups and potential biomarkers
• The SSR plot: a graphical representation for regression

Describes a project that uses

Uses Software

• impute

This page was built for publication: Several biplot methods applied to gene expression data

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2475736)