shaman

Authors Netta Mendelson-Cohen, Aviezer Lifshitz, Amos Tanay

Last update 18 October 2026

Copyright license GNU General Public License, version 2.0, GNU General Public License, version 3.0

Software version identifier 2.1.0, PACKAGES.rds, 2.1.1

Description

Generate expected Hi-C (genome-wide chromosome conformation capture) data maintaining marginal coverage, and the decay in contact probability with increasing genomic distance. Expected Hi-C data is used for normalization and graphical presentation of statistical significance of observed Hi-C contact enrichments. The method is described in Mendelson Cohen et al. (2017) <doi:10.1101/187203>.

Cites work

SHAMAN: bin-free randomization, normalization and screening of Hi-C matrices

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