Signaling networks: asynchronous Boolean models

DOI10.1016/B978-0-12-801213-0.00004-6MaRDI QIDQ2811730zbMATH OpenOpenAlexFDO

Authors Réka Albert, R. Robeva

Publication date 10 June 2016

Published in Algebraic and Discrete Mathematical Methods for Modern Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/b978-0-12-801213-0.00004-6

zbMATH Keywords

asynchronous updateattractorBoolean logicBoolean networkBoolean network modeldiscrete dynamical systemdiscrete modelelementary signaling modeexpanded networksignal propagationsignal transductionsignaling networksynchronous update

Mathematics Subject Classification ID

Applications of graph theory (05C90) Systems biology, networks (92C42)

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Cited in

(12)

• Boolean networks: beyond generalized asynchronicity
• Attractor analysis of asynchronous Boolean models of signal transduction networks
• Asynchronous Boolean networks and hereditarily bijective maps
• Modeling of molecular networks
• Boolean network analysis of a neurotransmitter signaling pathway
• Asynchronous threshold networks with multisorted signals
• Learning Boolean logic models of signaling networks with ASP
• Reaction network models as a tool to study gene regulation and cell signaling in development and diseases
• A dynamical low-rank approach to solve the chemical master equation for biological reaction networks
• Stability of linear Boolean networks
• Computation of fixed points in MAX and MIN multi-state networks
• Hypothesizing about signaling networks

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