hagis
Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity
Martin I. Chilvers, Zachary A Noel, Austin G. McCoy, Adam H. Sparks
Last update: 6 September 2023
Copyright license: MIT license, File License
Software version identifier: 3.1.4, 3.1.6, 2.0.0, 3.0.0, 3.0.1, 3.1.0, 3.1.1, 3.1.2, 3.1.3, 3.1.11
Analysis of plant pathogen pathotype survey data. Functions provided calculate distribution of susceptibilities, distribution of complexities with statistics, pathotype frequency distribution, as well as diversity indices for pathotypes. This package is meant to be a direct replacement for Herrmann, Löwer and Schachtel's (1999) <doi:10.1046/j.1365-3059.1999.00325.x> Habgood-Gilmour Spreadsheet, 'HaGiS', previously used for pathotype analysis.
