Platypus

MaRDI QIDQ100283CRANFDO

Authors Alexander Yermanos

Last update 21 February 2024

Copyright license GNU General Public License, version 2.0

Software version identifier 3.4.1, 3.2.3, 3.3.2, 3.3.5, 3.5.0

Description

We present 'Platypus', an open-source software platform providing a user-friendly interface to investigate B-cell receptor and T-cell receptor repertoires from scSeq experiments. 'Platypus' provides a framework to automate and ease the analysis of single-cell immune repertoires while also incorporating transcriptional information involving unsupervised clustering, gene expression and gene ontology. This R version of 'Platypus' is part of the 'ePlatypus' ecosystem for computational analysis of immunogenomics data: Yermanos et al. (2021) <doi:10.1093/nargab/lqab023>, Cotet et al. (2023) <doi:10.1093/bioinformatics/btad553>.

Cites work

• Platypus: an open-access software for integrating lymphocyte single-cell immune repertoires with transcriptomes
• ePlatypus: an ecosystem for computational analysis of immunogenomics data

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