CRABS

Congruent Rate Analyses in Birth-Death Scenarios

Sebastian Höhna, Andrew F. Magee, Jérémy Andréoletti, Bjørn Tore Kopperud

Last update: 24 October 2023

Copyright license: GNU General Public License, version 3.0

Software version identifier: 1.1.0, 1.2.0

Features tools for exploring congruent phylogenetic birth-death models. It can construct the pulled speciation- and net-diversification rates from a reference model. Given alternative speciation- or extinction rates, it can construct new models that are congruent with the reference model. Functionality is included to sample new rate functions, and to visualize the distribution of one congruence class. See also Louca & Pennell (2020) <doi:10.1038/s41586-020-2176-1>.

Cites work

Extant timetrees are consistent with a myriad of diversification histories