cellpypes
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Software:108147
Cell Type Pipes for Single-Cell RNA Sequencing Data
Last update: 27 January 2024
Software version identifier: 0.1.3, 0.3.0
Copyright license: GNU General Public License
Annotate single-cell RNA sequencing data manually based on marker gene thresholds. Find cell type rules (gene+threshold) through exploration, use the popular piping operator '%>%' to reconstruct complex cell type hierarchies. 'cellpypes' models technical noise to find positive and negative cells for a given expression threshold and returns cell type labels or pseudobulks. Cite this package as Frauhammer (2022) <doi:10.5281/zenodo.6555728> and visit <https://github.com/FelixTheStudent/cellpypes> for tutorials and newest features.
