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Batch Correction of Single Cell Transcriptome Data

Diego Diez, Martin Loza

Last update: 8 December 2023

Copyright license: MIT license, File License

Software version identifier: 0.2.1, 0.2.0, 0.2.2, 0.2.3, 0.2.4, 0.2.5

Description

Non-linear/linear hybrid method for batch-effect correction that uses Mutual Nearest Neighbors (MNNs) to identify similar cells between datasets. Reference: Loza M. et al. (NAR Genomics and Bioinformatics, 2020) <doi:10.1093/nargab/lqac022>.

Cites work

• Unbiased integration of single cell transcriptome replicates

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