easyDifferentialGeneCoexpression
CRANeasyDifferentialGeneCoexpressionMaRDI QIDQ114783FDOQ114783
Easily Performs Differential Coexpression Analysis
Last update: 5 February 2024
Copyright license: GNU General Public License, version 3.0
Software version identifier: 1.0, 0.7, 0.8, 0.9, 1.4
A function that reads in the GEO code of a list of probesets or gene symbols, a gene expression dataset GEO accession code, the name of the dataset feature discriminating the two conditions for the differential coexpression, and the values of the two different conditions for the differential coexpression, and returns the significant pairs of genes/probesets with highest differential coexpression (p-value < 0.005). If the input gene list is made of gene symbols, this package associates the probesets to these gene symbols, if found. Platforms available: GPL80, GPL8300, GPL80, GPL96, GPL570, GPL571, GPL20115, GPL1293, GPL6102, GPL6104, GPL6883, GPL6884, GPL13497, GPL14550, GPL17077, GPL6480. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>.
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