clustra

Clustering Longitudinal Trajectories

Hanna Gerlovin, George Ostrouchov, David Gagnon

Last update: 10 January 2024

Copyright license: File License, 2-clause BSD License

Software version identifier: 0.1.6, 0.1.5, 0.2.0, 0.2.1

Description

Clusters longitudinal trajectories over time (can be unequally spaced, unequal length time series and/or partially overlapping series) on a common time axis. Performs k-means clustering on a single continuous variable measured over time, where each mean is defined by a thin plate spline fit to all points in a cluster. Distance is MSE across trajectory points to cluster spline. Provides graphs of derived cluster splines, silhouette plots, and Adjusted Rand Index evaluations of the number of clusters. Scales well to large data with multicore parallelism available to speed computation.

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