mixKernel
Omics Data Integration Using Kernel Methods
Remi Flamary, Celine Brouard, Julien Henry, Jerome Mariette, Nathalie Vialaneix
Last update: 27 January 2024
Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0
Software version identifier: 0.8, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.9, 0.9-1
Kernel-based methods are powerful methods for integrating heterogeneous types of data. mixKernel aims at providing methods to combine kernel for unsupervised exploratory analysis. Different solutions are provided to compute a meta-kernel, in a consensus way or in a way that best preserves the original topology of the data. mixKernel also integrates kernel PCA to visualize similarities between samples in a non linear space and from the multiple source point of view <doi:10.1093/bioinformatics/btx682>. A method to select (as well as funtions to display) important variables is also provided <doi:10.1093/nargab/lqac014>.
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