segclust2d
CRANsegclust2dMaRDI QIDQ120331
Bivariate Segmentation/Clustering Methods and Tools
Emilie Lebarbier, Remi Patin, Simon Benhamou, Marie-Pierre Etienne
Last update: 21 August 2023
Copyright license: GNU General Public License, version 3.0
Software version identifier: 0.3.0, 0.1.0, 0.2.0, 0.3.1
Provides two methods for segmentation and joint segmentation/clustering of bivariate time-series. Originally intended for ecological segmentation (home-range and behavioural modes) but easily applied on other series, the package also provides tools for analysing outputs from R packages 'moveHMM' and 'marcher'. The segmentation method is a bivariate extension of Lavielle's method available in 'adehabitatLT' (Lavielle, 1999 <doi:10.1016/S0304-4149(99)00023-X> and 2005 <doi:10.1016/j.sigpro.2005.01.012>). This method rely on dynamic programming for efficient segmentation. The segmentation/clustering method alternates steps of dynamic programming with an Expectation-Maximization algorithm. This is an extension of Picard et al (2007) <doi:10.1111/j.1541-0420.2006.00729.x> method (formerly available in 'cghseg' package) to the bivariate case. The method is fully described in Patin et al (2018) <doi:10.1101/444794>.
- Detection of multiple changes in a sequence of dependent variables
- Using penalized contrasts for the change-point problem
- A Segmentation/Clustering Model for the Analysis of Array CGH Data
- Identifying stationary phases in multivariate time-series for highlighting behavioural modes and home range settlements
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