polyqtlR

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QTL Analysis in Autopolyploid Bi-Parental F1 Populations

Peter M Bourke

Last update: 9 January 2024

Copyright license: GNU General Public License, version 3.0

Software version identifier: 0.0.9, 0.0.4, 0.0.5, 0.0.6, 0.0.7, 0.0.8, 0.1.0, 0.1.1

Source code repository: https://github.com/cran/polyqtlR

Description

Quantitative trait loci (QTL) analysis and exploration of meiotic patterns in autopolyploid bi-parental F1 populations. For all ploidy levels, identity-by-descent (IBD) probabilities can be estimated. Significance thresholds, exploring QTL allele effects and visualising results are provided. For more background and to reference the package see <doi:10.1093/bioinformatics/btab574>.

Cites work

• Detecting quantitative trait loci and exploring chromosomal pairing in autopolyploids using polyqtlR

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