polymapR

swMATH42375CRANpolymapRMaRDI QIDQ1352500

Linkage Analysis in Outcrossing Polyploids

Geert van Geest, Peter M Bourke

Last update: 8 January 2024

Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0

Software version identifier: 1.1.3, 1.0.11, 1.0.12, 1.0.13, 1.0.14, 1.0.15, 1.0.16, 1.0.17, 1.0.18, 1.0.19, 1.0.20, 1.1.0, 1.1.1, 1.1.2, 1.1.4, 1.1.5

Source code repository: https://github.com/cran/polymapR

Description

Creation of linkage maps in polyploid species from marker dosage scores of an F1 cross from two heterozygous parents. Currently works for outcrossing diploid, autotriploid, autotetraploid and autohexaploid species, as well as segmental allotetraploids. Methods are described in a manuscript of Bourke et al. (2018) <doi:10.1093/bioinformatics/bty371>. Since version 1.1.0, both discrete and probabilistic genotypes are acceptable input; for more details on the latter see Liao et al. (2021) <doi:10.1007/s00122-021-03834-x>.

Cites work

• polymapR—linkage analysis and genetic map construction from F1 populations of outcrossing polyploids
• Using probabilistic genotypes in linkage analysis of polyploids

This page was built for software: polymapR