PeakSegDisk

swMATH41661CRANPeakSegDiskMaRDI QIDQ1353446FDOQ1353446

Disk-Based Constrained Change-Point Detection

Toby Dylan Hocking

Last update: 28 November 2023

Copyright license: GNU General Public License, version 3.0

Software version identifier: 2022.2.1, 2018.11.28, 2019.7.29, 2019.9.10, 2019.9.27, 2020.8.13, 2023.9.4, 2023.11.27

Source code repository: https://github.com/cran/PeakSegDisk

Description

Disk-based implementation of Functional Pruning Optimal Partitioning with up-down constraints <doi:10.18637/jss.v101.i10> for single-sample peak calling (independently for each sample and genomic problem), can handle huge data sets (10^7 or more).

Cites work

• Generalized Functional Pruning Optimal Partitioning (GFPOP) for Constrained Changepoint Detection in Genomic Data

Cited In (2)

• Title not available (Why is that?)
• Alternating Pruned Dynamic Programming for Multiple Epidemic Change-Point Estimation

This page was built for software: PeakSegDisk