phyloseqGraphTest

CRANphyloseqGraphTestMaRDI QIDQ140708FDOQ140708

Graph-Based Permutation Tests for Microbiome Data

Julia Fukuyama

Last update: 5 February 2024

Copyright license: CC0

Software version identifier: 0.1.0, 0.0.1, 0.0.2, 0.1.1

Description

Provides functions for graph-based multiple-sample testing and visualization of microbiome data, in particular data stored in 'phyloseq' objects. The tests are based on those described in Friedman and Rafsky (1979) <http://www.jstor.org/stable/2958919>, and the tests are described in more detail in Callahan et al. (2016) <doi:10.12688/f1000research.8986.1>.

Cites work

• Bioconductor workflow for microbiome data analysis: from raw reads to community analyses

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