pcalg
swMATH6072CRANpcalgMaRDI QIDQ18210FDOQ18210
Methods for Graphical Models and Causal Inference
Markus Kalisch, Martin Maechler, Alain Hauser
Last update: 12 February 2024
Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0
Software version identifier: 2.7-8, 0.1-3, 0.1-4, 0.1-5, 0.1-6, 0.1-7, 0.1-8, 0.1-9, 1.0-0, 1.0-2, 1.1-2, 1.1-4, 1.1-5, 1.1-6, 2.0-1, 2.0-2, 2.0-3, 2.0-10, 2.2-0, 2.2-2, 2.2-3, 2.2-4, 2.4-2, 2.4-3, 2.4-5, 2.5-0, 2.6-0, 2.6-2, 2.6-5, 2.6-6, 2.6-7, 2.6-8, 2.6-9, 2.6-10, 2.6-11, 2.6-12, 2.7-0, 2.7-1, 2.7-2, 2.7-3, 2.7-4, 2.7-5, 2.7-6, 2.7-7, 2.7-9, 2.7-10, 2.7-11
Source code repository: https://github.com/cran/pcalg
Functions for causal structure learning and causal inference using graphical models. The main algorithms for causal structure learning are PC (for observational data without hidden variables), FCI and RFCI (for observational data with hidden variables), and GIES (for a mix of data from observational studies (i.e. observational data) and data from experiments involving interventions (i.e. interventional data) without hidden variables). For causal inference the IDA algorithm, the Generalized Backdoor Criterion (GBC), the Generalized Adjustment Criterion (GAC) and some related functions are implemented. Functions for incorporating background knowledge are provided.
Cited In (96)
- Causal discovery in heavy-tailed models
- A uniformly consistent estimator of causal effects under the \(k\)-triangle-faithfulness assumption
- Two optimal strategies for active learning of causal models from interventional data
- Geometry of the faithfulness assumption in causal inference
- Inferring sparse Gaussian graphical models with latent structure
- Estimating high-dimensional directed acyclic graphs with the PC-algorithm
- Learning high-dimensional directed acyclic graphs with latent and selection variables
- Hypersurfaces and their singularities in partial correlation testing
- Testing covariates in high dimension linear regression with latent factors
- High dimensional sparse covariance estimation via directed acyclic graphs
- Sparse permutation invariant covariance estimation
- Causal statistical inference in high dimensions
- A focused information criterion for graphical models
- Treelets -- an adaptive multi-scale basis for sparse unordered data
- Faithfulness and learning hypergraphs from discrete distributions
- Testing a single regression coefficient in high dimensional linear models
- Partitioned hybrid learning of Bayesian network structures
- Adaptive estimation of covariance matrices via Cholesky decomposition
- Estimation of positive definite \(M\)-matrices and structure learning for attractive Gaussian Markov random fields
- Estimating causal structure using conditional DAG models
- Finding optimal Bayesian network given a super-structure
- Determining full conditional independence by low-order conditioning
- Complete Graphical Characterization and Construction of Adjustment Sets in Markov Equivalence Classes of Ancestral Graphs
- Structure learning in Bayesian networks using regular vines
- Entropy inference and the James-Stein estimator, with application to nonlinear gene association networks
- Objective Bayesian search of Gaussian directed acyclic graphical models for ordered variables with non-local priors
- High-dimensional Gaussian model selection on a Gaussian design
- Penalized Estimation of Directed Acyclic Graphs From Discrete Data
- Learning marginal AMP chain graphs under faithfulness revisited
- Learning causal graphs with latent confounders in weak faithfulness violations
- Title not available (Why is that?)
- qtlnet
- MRPC
- kpcalg
- BiDAG
- Title not available (Why is that?)
- Title not available (Why is that?)
- micd
- tpc
- Marginal integration for nonparametric causal inference
- A Bayesian graphical model for ChIP-Seq data on histone modifications
- Scalable multi-output label prediction: from classifier chains to classifier trellises
- Penalized likelihood methods for estimation of sparse high-dimensional directed acyclic graphs
- \(\ell_{0}\)-penalized maximum likelihood for sparse directed acyclic graphs
- causalDisco
- Title not available (Why is that?)
- NetCoupler
- Testing conditional independence in supervised learning algorithms
- eff2
- Title not available (Why is that?)
- Structural Intervention Distance for Evaluating Causal Graphs
- mDAG
- pcgen
- A hybrid Bayesian network learning method for constructing gene networks
- High-dimensional structure estimation in Ising models: local separation criterion
- High-dimensional Ising model selection using \(\ell _{1}\)-regularized logistic regression
- Inferring large graphs using \(\ell_1\)-penalized likelihood
- Title not available (Why is that?)
- The three faces of faithfulness
- Copula directed acyclic graphs
- Reversible MCMC on Markov equivalence classes of sparse directed acyclic graphs
- Estimating high-dimensional intervention effects from observational data
- Causal inference in partially linear structural equation models
- clustNet
- SID
- A survey on causal discovery: theory and practice
- Compatible priors for model selection of high-dimensional Gaussian DAGs
- Improving Bayesian network local structure learning via data-driven symmetry correction methods
- Learning causal structure from mixed data with missing values using Gaussian copula models
- High-dimensional consistency in score-based and hybrid structure learning
- Bayesian Networks
- Estimating bounds on causal effects in high-dimensional and possibly confounded systems
- A local method for identifying causal relations under Markov equivalence
- A Gibbs sampler for learning DAGs
- Copula Grow-Shrink Algorithm for Structural Learning
- Uniform random generation of large acyclic digraphs
- \(\mathsf{PenPC}\): a two-step approach to estimate the skeletons of high-dimensional directed acyclic graphs
- Title not available (Why is that?)
- Greedy Causal Discovery Is Geometric
- From dependency to causality: a machine learning approach
- Ultra-scalable and efficient methods for hybrid observational and experimental local causal pathway discovery
- Inferring gene regulatory networks by an order independent algorithm using incomplete data sets
- Title not available (Why is that?)
- Inferring gene regulatory networks by PCA-CMI using Hill climbing algorithm based on MIT score and SORDER method
- Causal network reconstruction from time series: From theoretical assumptions to practical estimation
- Robust Causal Structure Learning with Some Hidden Variables
- Separators and adjustment sets in causal graphs: complete criteria and an algorithmic framework
- A generalized back-door criterion
- Fast causal orientation learning in directed acyclic graphs
- Modelling an energy market with Bayesian networks for non-normal data
- Efficient Learning of Quadratic Variance Function Directed Acyclic Graphs via Topological Layers
- Title not available (Why is that?)
- Large-scale local causal inference of gene regulatory relationships
- Knowledge transfer for causal discovery
- Bayesian network structural learning from complex survey data: a resampling based approach
- Efficient Sampling and Structure Learning of Bayesian Networks
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