plsgenomics
swMATH7949CRANplsgenomicsMaRDI QIDQ19965FDOQ19965
PLS Analyses for Genomics
Last update: 27 November 2023
Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0
Software version identifier: 1.5-2, 1.0, 1.1.1, 1.1.2, 1.1, 1.2-1, 1.2-2, 1.2-4, 1.2-6, 1.2, 1.3-1, 1.3-2, 1.3, 1.5-1, 1.5, 1.5-2.1
Source code repository: https://github.com/cran/plsgenomics
Routines for PLS-based genomic analyses, implementing PLS methods for classification with microarray data and prediction of transcription factor activities from combined ChIP-chip analysis. The >=1.2-1 versions include two new classification methods for microarray data: GSIM and Ridge PLS. The >=1.3 versions includes a new classification method combining variable selection and compression in logistic regression context: logit-SPLS; and an adaptive version of the sparse PLS.
Cited In (11)
- [HDDA] sparse subspace constrained partial least squares
- InfoGram and admissible machine learning
- A variational approximations-DIC rubric for parameter estimation and mixture model selection within a family setting
- Clustering, classification, discriminant analysis, and dimension reduction via generalized hyperbolic mixtures
- Model-free feature screening for ultrahigh dimensional data via a Pearson chi-square based index
- Comparative study of L1 regularized logistic regression methods for variable selection
- Prediction of tumour pathological subtype from genomic profile using sparse logistic regression with random effects
- An empirical comparison of two approaches for CDPCA in high-dimensional data
- MultiGroupO
- Dimension reduction for model-based clustering via mixtures of multivariate \(t\)-distributions
- Ensemble of penalized logistic models for classification of high-dimensional data
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