seriation
swMATH8209CRANseriationMaRDI QIDQ20219FDOQ20219
Infrastructure for Ordering Objects Using Seriation
Michael Hahsler, Kurt Hornik, Christian Buchta
Last update: 12 December 2023
Copyright license: GNU General Public License, version 3.0
Software version identifier: 1.4.2, 0.1-1, 0.1-3, 0.1-4, 0.1-5, 0.1-6, 1.0-0, 1.0-1, 1.0-2, 1.0-3, 1.0-4, 1.0-5, 1.0-6, 1.0-7, 1.0-8, 1.0-9, 1.0-10, 1.0-11, 1.0-12, 1.0-13, 1.0-14, 1.1-0, 1.1-1, 1.1-2, 1.1-3, 1.2-0, 1.2-1, 1.2-2, 1.2-3, 1.2-5, 1.2-6, 1.2-7, 1.2-8, 1.2-9, 1.3.0, 1.3.1, 1.3.2, 1.3.3, 1.3.4, 1.3.5, 1.3.6, 1.4.0, 1.4.1, 1.5.0, 1.5.1, 1.5.2, 1.5.3, 1.5.4
Source code repository: https://github.com/cran/seriation
Infrastructure for ordering objects with an implementation of several seriation/sequencing/ordination techniques to reorder matrices, dissimilarity matrices, and dendrograms. Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT). Hahsler et al (2008) <doi:10.18637/jss.v025.i03>.
Cited In (29)
- Seriation using tree-penalized path length
- Quantile map: simultaneous visualization of patterns in many distributions with application to tandem mass spectrometry
- An Approximation Algorithm for l infinity Fitting Robinson Structures to Distances.
- An Optimization Parameter for Seriation of Noisy Data
- An experimental comparison of seriation methods for one-mode two-way data
- Seriation in the presence of errors: a factor 16 approximation algorithm for \(l_{\infty }\)-fitting Robinson structures to distances
- A multi-scale seriation algorithm for clustering sparse imbalanced data: application to spike sorting
- Convex biclustering
- Discovering bands from graphs
- Visualizing Variable Importance and Variable Interaction Effects in Machine Learning Models
- arulesViz
- heatmaply
- corrr
- pergola
- DendSer
- baizer
- Two-way incremental seriation in the temporal domain with three-dimensional visualization: making sense of evolving high-dimensional datasets
- \texttt{PQser:} a Matlab package for spectral seriation
- MEDseq
- RMaCzek
- The seriation problem in the presence of a double Fiedler value
- GAP: a graphical environment for matrix visualization and cluster analysis
- adepro
- Bivariate Residual Plots With Simulation Polygons
- elaborator
- treeheatr
- ClusteredMutations
- Continuation methods for approximate large scale object sequencing
- Similarity-First Search: A New Algorithm with Application to Robinsonian Matrix Recognition
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