pegas
swMATH8307CRANpegasMaRDI QIDQ20317
Population and Evolutionary Genetics Analysis System
Zhian N. Kamvar, Klaus Schliep, Emmanuel Paradis, Brian J. Knaus, Thibaut Jombart, David J. Winter, Alastair J. Potts
Last update: 13 December 2023
Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0
Software version identifier: 1.2, 0.1, 0.2, 0.3-1, 0.3-2, 0.3-3, 0.3-4, 0.3, 0.4-1, 0.4-2, 0.4-3, 0.4-4, 0.4-5, 0.4, 0.5-1, 0.5, 0.6, 0.7, 0.8-1, 0.8-2, 0.8, 0.9, 0.10, 0.11, 0.12, 0.13, 0.14, 1.0-1, 1.0, 1.1, 1.3
Source code repository: https://github.com/cran/pegas
Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.
