marked

MaRDI QIDQ26305swMATHCRANFDO

Authors Jeff Laake

Last update 19 October 2023

Copyright license GNU General Public License, version 3.0, GNU General Public License, version 2.0

Software version identifier 1.2.6, 1.0.9, 1.1.2, 1.1.3, 1.1.6, 1.1.8, 1.1.9, 1.1.10, 1.1.11, 1.1.13, 1.2.1, 1.2.8

Official website https://cran.r-project.org/web/packages/marked/index.html

Source code repository https://github.com/cran/marked

Description

Functions for fitting various models to capture-recapture data including mixed-effects Cormack-Jolly-Seber(CJS) and multistate models and the multi-variate state model structure for survival estimation and POPAN structured Jolly-Seber models for abundance estimation. There are also Hidden Markov model (HMM) implementations of CJS and multistate models with and without state uncertainty and a simulation capability for HMM models.

Cited in

(14)

• Accounting for contamination and outliers in covariates for open population capture-recapture models
• E-Surge
• Rcapture
• EstimateN
• Program MARK
• PRESENCE
• RMark
• mrds
• mra
• conting
• MARK
• Performance of distance sampling estimators: a simulation study for designs based on footpaths
• Hidden Markov model for dependent mark loss and survival estimation
• Analysis of capture-recapture data

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