CMplot
swMATH15269CRANCMplotMaRDI QIDQ27160FDOQ27160
Circle Manhattan Plot
Last update: 19 January 2024
Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0
Software version identifier: 4.2.0, 4.3.1, 1.0.1, 2.0.1, 3.0.1, 3.0.3, 3.1.3, 3.1.4, 3.2.0, 3.2.1, 3.3.0, 3.3.1, 3.3.3, 3.4.0, 3.5.1, 3.6.0, 3.6.2, 3.7.0, 4.0.0, 4.1.0, 4.4.1, 4.4.3, 4.5.0, 4.5.1
Source code repository: https://github.com/cran/CMplot
Manhattan plot, a type of scatter plot, was widely used to display the association results. However, it is usually time-consuming and laborious for a non-specialist user to write scripts and adjust parameters of an elaborate plot. Moreover, the ever-growing traits measured have necessitated the integration of results from different Genome-wide association study researches. Circle Manhattan Plot is the first open R package that can lay out. Genome-wide association study P-value results in both traditional rectangular patterns, QQ-plot and novel circular ones. United in only one bull's eye style plot, association results from multiple traits can be compared interactively, thereby to reveal both similarities and differences between signals. Additional functions include: highlight signals, a group of SNPs, chromosome visualization and candidate genes around SNPs.
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