PTXQC

Quality Report Generation for MaxQuant and mzTab Results

Last update: 15 December 2023

Copyright license: 3-clause BSD License, File License

Software version identifier: 1.0.14, 1.0.15, 1.0.16, 0.80.13, 0.80.14, 0.82.2, 0.82.3, 0.82.5, 0.82.6, 0.90.0, 0.91.0, 0.92.0, 0.92.3, 0.92.4, 0.92.5, 0.92.6, 1.0.0, 1.0.1, 1.0.2, 1.0.4, 1.0.5, 1.0.7, 1.0.8, 1.0.9, 1.0.10, 1.0.11, 1.0.12, 1.0.13, 1.0.17, 1.1.0

Source code repository: https://github.com/cran/PTXQC

Description

Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool). Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format. Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) <doi:10.1021/acs.jproteome.5b00780>.

Cites work

Proteomics Quality Control: Quality Control Software for MaxQuant Results