compound.Cox

MaRDI QIDQ29750swMATHCRANFDO

Authors Takeshi Emura

Last update 10 July 2023

Copyright license GNU General Public License, version 2.0

Software version identifier 3.28, 1.0, 1.1, 1.2, 1.3, 1.4, 2.0, 2.1, 3.0, 3.1, 3.2, 3.3, 3.4, 3.5, 3.6, 3.7, 3.8, 3.9, 3.10, 3.11, 3.12, 3.13, 3.14, 3.15, 3.16, 3.17, 3.18, 3.19, 3.20, 3.21, 3.22, 3.23, 3.24, 3.25, 3.26, 3.27, 3.29, 3.30

Official website https://cran.r-project.org/web/packages/compound.Cox/index.html

Source code repository https://github.com/cran/compound.Cox

Description

Univariate feature selection and compound covariate methods under the Cox model with high-dimensional features (e.g., gene expressions). Available are survival data for non-small-cell lung cancer patients with gene expressions (Chen et al 2007 New Engl J Med) <doi:10.1056/NEJMoa060096>, statistical methods in Emura et al (2012 PLoS ONE) <doi:10.1371/journal.pone.0047627>, Emura & Chen (2016 Stat Methods Med Res) <doi:10.1177/0962280214533378>, and Emura et al (2019)<doi:10.1016/j.cmpb.2018.10.020>. Algorithms for generating correlated gene expressions are also available. Estimation of survival functions via copula-graphic (CG) estimators is also implemented, which is useful for sensitivity analyses under dependent censoring (Yeh et al 2023) <doi:10.3390/biomedicines11030797>.

Cites work

• A Five-Gene Signature and Clinical Outcome in Non–Small-Cell Lung Cancer
• Gene selection for survival data under dependent censoring: A copula-based approach
• Sensitivity Analysis for Survival Prognostic Prediction with Gene Selection: A Copula Method for Dependent Censoring
• Survival Prediction Based on Compound Covariate under Cox Proportional Hazard Models
• compound.Cox: Univariate feature selection and compound covariate for predicting survival

Cited in

(24)

• Survival analysis with correlated endpoints. Joint frailty-copula models
• Penalized Cox regression with a five-parameter spline model
• scientific article; zbMATH DE number 7670297 (Why is no real title available?)
• Model diagnostic procedures for copula-based Markov chain models for statistical process control
• scientific article; zbMATH DE number 7670300 (Why is no real title available?)
• ctree
• HSAUR
• bayesSurv
• joint.Cox
• surrosurv
• LSS
• Copula.Markov
• Glmnet
• GFGM.copula
• RobustAFT
• blmeco
• Bivariate.Pareto
• uni.survival.tree
• Copula.Markov.survival
• A high-dimensional spatial rank test for two-sample location problems
• G2Vec
• Estimation of the Mann-Whitney effect in the two-sample problem under dependent censoring
• A Bayesian approach with generalized ridge estimation for high-dimensional regression and testing
• scientific article; zbMATH DE number 7670290 (Why is no real title available?)

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