pcadapt

Fast Principal Component Analysis for Outlier Detection

Michael G. B. Blum, Florian Privé, Keurcien Luu

Last update: 29 August 2023

Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0

Software version identifier: 4.3.3, 1.0, 2.0.1, 2.0, 2.1.1, 2.1, 2.2, 3.0.1, 3.0.2, 3.0.3, 3.0.4, 3.0, 4.0.0, 4.0.1, 4.0.3, 4.1.0, 4.3.1, 4.3.5

Source code repository: https://github.com/cran/pcadapt

Description

Methods to detect genetic markers involved in biological adaptation. 'pcadapt' provides statistical tools for outlier detection based on Principal Component Analysis. Implements the method described in (Luu, 2016) <doi:10.1111/1755-0998.12592> and later revised in (Privé, 2020) <doi:10.1093/molbev/msaa053>.

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