seqminer

swMATH19681CRANseqminerMaRDI QIDQ31506

Efficiently Read Sequence Data (VCF Format, BCF Format, METAL Format and BGEN Format) into R

Xiaowei Zhan, Dajiang Liu

Last update: 3 February 2024

Software version identifier: 8.9, 0.1, 0.2, 0.3, 0.5, 0.7, 1.0, 1.3, 1.4, 1.9.1, 1.9, 2.0, 2.2, 2.7, 3.0, 3.1, 3.4, 3.7, 3.9, 4.2, 4.5, 4.7, 4.9, 5.0, 5.2, 5.3, 5.7, 5.9, 6.0, 6.1, 6.7, 7.0, 7.1, 8.0, 8.2, 8.4, 8.5, 8.6, 9.1, 9.3, 9.4

Source code repository: https://github.com/cran/seqminer

Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0, File License

Description

Integrate sequencing data (Variant call format, e.g. VCF or BCF) or meta-analysis results in R. This package can help you (1) read VCF/BCF/BGEN files by chromosomal ranges (e.g. 1:100-200); (2) read RareMETAL summary statistics files; (3) read tables from a tabix-indexed files; (4) annotate VCF/BCF files; (5) create customized workflow based on Makefile.