haplo.stats

swMATH20042CRANhaplo.statsMaRDI QIDQ31864

Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous

Sinnwell Jp

Last update: 2 February 2024

Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0

Software version identifier: 1.9.3, 1.1.0, 1.1.1, 1.2.0, 1.2.1, 1.2.2, 1.3.0, 1.3.1, 1.3.8, 1.4.3, 1.4.4, 1.5.2, 1.5.5, 1.5.6, 1.5.8, 1.6.1, 1.6.3, 1.6.8, 1.6.11, 1.7.1, 1.7.6, 1.7.7, 1.7.9, 1.8.2, 1.8.5, 1.8.6, 1.8.7, 1.8.9, 1.9.2, 1.9.5, 1.9.5.1

Source code repository: https://github.com/cran/haplo.stats

Description

Routines for the analysis of indirectly measured haplotypes. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The main functions are: haplo.em(), haplo.glm(), haplo.score(), and haplo.power(); all of which have detailed examples in the vignette.

Related Items (6)

Tree-based quantitative trait mapping in the presence of external covariates ⋮ haplo.ccs ⋮ IFP ⋮ pould ⋮ SNPassoc ⋮ BIGDAWG

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