ctmm
swMATH21677CRANctmmMaRDI QIDQ33479
Continuous-Time Movement Modeling
Christen H. Fleming, Justin M. Calabrese
Last update: 23 September 2023
Software version identifier: 1.1.0, 0.2.7, 0.2.8, 0.2.9, 0.3.0, 0.3.1, 0.3.2, 0.3.3, 0.3.4, 0.3.5, 0.3.6, 0.4.0, 0.4.1, 0.5.0, 0.5.1, 0.5.2, 0.5.3, 0.5.4, 0.5.5, 0.5.6, 0.5.7, 0.5.8, 0.5.9, 0.5.10, 0.6.0, 0.6.1, 1.0.0, 1.2.0
Source code repository: https://github.com/cran/ctmm
Copyright license: GNU General Public License, version 3.0
Functions for identifying, fitting, and applying continuous-space, continuous-time stochastic-process movement models to animal tracking data. The package is described in Calabrese et al (2016) <doi:10.1111/2041-210X.12559>, with models and methods based on those introduced and detailed in Fleming & Calabrese et al (2014) <doi:10.1086/675504>, Fleming et al (2014) <doi:10.1111/2041-210X.12176>, Fleming et al (2015) <doi:10.1103/PhysRevE.91.032107>, Fleming et al (2015) <doi:10.1890/14-2010.1>, Fleming et al (2016) <doi:10.1890/15-1607>, Péron & Fleming et al (2016) <doi:10.1186/s40462-016-0084-7>, Fleming & Calabrese (2017) <doi:10.1111/2041-210X.12673>, Péron et al (2017) <doi:10.1002/ecm.1260>, Fleming et al (2017) <doi:10.1016/j.ecoinf.2017.04.008>, Fleming et al (2018) <doi:10.1002/eap.1704>, Winner & Noonan et al (2018) <doi:10.1111/2041-210X.13027>, Fleming et al (2019) <doi:10.1111/2041-210X.13270>, Noonan & Fleming et al (2019) <doi:10.1186/s40462-019-0177-1>, Fleming et al (2020) <doi:10.1101/2020.06.12.130195>, Noonan et al (2021) <doi:10.1111/2041-210X.13597>, Fleming et al (2022) <doi:10.1111/2041-210X.13815>, Silva et al (2022) <doi:10.1111/2041-210X.13786>, Alston & Fleming et al (2023) <doi:10.1111/2041-210X.14025>.
- ctmm: an r package for analyzing animal relocation data as a continuous‐time stochastic process
- From Fine-Scale Foraging to Home Ranges: A Semivariance Approach to Identifying Movement Modes across Spatiotemporal Scales
- Non-Markovian maximum likelihood estimation of autocorrelated movement processes
- Maximum-entropy description of animal movement
- Rigorous home range estimation with movement data: a new autocorrelated kernel density estimator
- Estimating where and how animals travel: An optimal framework for path reconstruction from autocorrelated tracking data
- Uncovering periodic patterns of space use in animal tracking data with periodograms, including a new algorithm for the Lomb-Scargle periodogram and improved randomization tests
- A new kernel density estimator for accurate home‐range and species‐range area estimation
- Periodic continuous-time movement models uncover behavioral changes of wild canids along anthropization gradients
- Kálmán filters for continuous-time movement models
- Correcting for missing and irregular data in home‐range estimation
- Statistical inference for home range overlap
- Overcoming the challenge of small effective sample sizes in home‐range estimation
- Scale-insensitive estimation of speed and distance traveled from animal tracking data
- A comprehensive framework for handling location error in animal tracking data
- Estimating encounter location distributions from animal tracking data
- Population‐level inference for home‐range areas
- Autocorrelation‐informed home range estimation: A review and practical guide
- Mitigating pseudoreplication and bias in resource selection functions with autocorrelation‐informed weighting
