protr

Generating Various Numerical Representation Schemes for Protein Sequences

Nan Xiao, Qing-Song Xu, Dong-Sheng Cao

Last update: 30 October 2023

Copyright license: 3-clause BSD License, File License

Software version identifier: 1.6-3, 0.1-0, 0.2-0, 0.2-1, 0.3-1, 0.4-1, 0.5-1, 1.0-1, 1.1-1, 1.2-0, 1.2-1, 1.3-0, 1.4-0, 1.4-1, 1.4-2, 1.5-0, 1.5-1, 1.5-2, 1.6-0, 1.6-1, 1.6-2, 1.7-0

Source code repository: https://github.com/cran/protr

Description

Comprehensive toolkit for generating various numerical features of protein sequences described in Xiao et al. (2015) <doi:10.1093/bioinformatics/btv042>. For full functionality, the software 'ncbi-blast+' is needed, see <https://blast.ncbi.nlm.nih.gov/doc/blast-help/downloadblastdata.html> for more information.

Cites work

protr/ProtrWeb: R package and web server for generating various numerical representation schemes of protein sequences