RPANDA
swMATH26127CRANRPANDAMaRDI QIDQ37859
Phylogenetic ANalyses of DiversificAtion
Nathan Mazet, Marc Manceau, Jonathan P. Drury, Leandro Aristide, Eric Lewitus, Odile Maliet, Fabien L. Condamine, Julien Clavel, Benoit Perez-Lamarque, Olivier Billaud, Hélène Morlon
Last update: 21 February 2024
Copyright license: GNU General Public License, version 2.0
Software version identifier: 2.2, 1.0, 1.1, 1.2, 1.3, 1.4, 1.5, 1.6, 1.7, 1.8, 1.9, 2.0, 2.1, 2.3
Source code repository: https://github.com/cran/RPANDA
Implements macroevolutionary analyses on phylogenetic trees. See Morlon et al. (2010) <doi:10.1371/journal.pbio.1000493>, Morlon et al. (2011) <doi:10.1073/pnas.1102543108>, Condamine et al. (2013) <doi:10.1111/ele.12062>, Morlon et al. (2014) <doi:10.1111/ele.12251>, Manceau et al. (2015) <doi:10.1111/ele.12415>, Lewitus & Morlon (2016) <doi:10.1093/sysbio/syv116>, Drury et al. (2016) <doi:10.1093/sysbio/syw020>, Manceau et al. (2016) <doi:10.1093/sysbio/syw115>, Morlon et al. (2016) <doi:10.1111/2041-210X.12526>, Clavel & Morlon (2017) <doi:10.1073/pnas.1606868114>, Drury et al. (2017) <doi:10.1093/sysbio/syx079>, Lewitus & Morlon (2017) <doi:10.1093/sysbio/syx095>, Drury et al. (2018) <doi:10.1371/journal.pbio.2003563>, Clavel et al. (2019) <doi:10.1093/sysbio/syy045>, Maliet et al. (2019) <doi:10.1038/s41559-019-0908-0>, Billaud et al. (2019) <doi:10.1093/sysbio/syz057>, Lewitus et al. (2019) <doi:10.1093/sysbio/syz061>, Aristide & Morlon (2019) <doi:10.1111/ele.13385>, Maliet et al. (2020) <doi:10.1111/ele.13592>, Drury et al. (2021) <doi:10.1371/journal.pbio.3001270>, Perez-Lamarque & Morlon (2022) <doi:10.1111/mec.16478>, Perez-Lamarque et al. (2022) <doi:10.1101/2021.08.30.458192>, Mazet et al. (2023) <doi:10.1111/2041-210X.14195>, Drury et al. (2024) <doi:10.1016/j.cub.2023.12.055>.
- A Penalized Likelihood Framework for High-Dimensional Phylogenetic Comparative Methods and an Application to New-World Monkeys Brain Evolution
- Inferring the Dynamics of Diversification: A Coalescent Approach
- Reconciling molecular phylogenies with the fossil record
- Macroevolutionary perspectives to environmental change
- Phylogenetic approaches for studying diversification
- Phylogenies support out-of-equilibrium models of biodiversity
- Characterizing and Comparing Phylogenies from their Laplacian Spectrum
- Estimating the Effect of Competition on Trait Evolution Using Maximum Likelihood Inference
- A unifying comparative phylogenetic framework including traits coevolving across interacting lineages
- RPANDA : an R package for macroevolutionary analyses on phylogenetic trees
- Accelerated body size evolution during cold climatic periods in the Cenozoic
- An Assessment of Phylogenetic Tools for Analyzing the Interplay Between Interspecific Interactions and Phenotypic Evolution
- Detecting Environment-Dependent Diversification From Phylogenies: A Simulation Study and Some Empirical Illustrations
- Contrasting impacts of competition on ecological and social trait evolution in songbirds
- A model with many small shifts for estimating species-specific diversification rates
- Estimating Diversity Through Time Using Molecular Phylogenies: Old and Species-Poor Frog Families are the Remnants of a Diverse Past
- Characterizing and Comparing Phylogenetic Trait Data from Their Normalized Laplacian Spectrum
- Understanding the effect of competition during evolutionary radiations: an integrated model of phenotypic and species diversification
- An individual‐based model for the eco‐evolutionary emergence of bipartite interaction networks
- Tempo and mode of morphological evolution are decoupled from latitude in birds
- Analysing diversification dynamics using barcoding data: The case of an obligate mycorrhizal symbiont
- Do closely related species interact with similar partners? Testing for phylogenetic signal in bipartite interaction networks
- Estimating clade‐specific diversification rates and palaeodiversity dynamics from reconstructed phylogenies
- Limited ecological opportunity influences the tempo of morphological evolution in birds
This page was built for software: RPANDA