inlabru

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Bayesian Latent Gaussian Modelling using INLA and Extensions

Fabian E. Bachl, Finn Lindgren

Last update: 21 December 2023

Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0

Software version identifier: 2.7.0, 2.1.1, 2.1.2, 2.1.3, 2.1.9, 2.1.12, 2.1.13, 2.3.0, 2.3.1, 2.4.0, 2.5.0, 2.5.2, 2.5.3, 2.6.0, 2.8.0, 2.9.0, 2.10.0, 2.10.1

Source code repository: https://github.com/cran/inlabru

Description

Facilitates spatial and general latent Gaussian modeling using integrated nested Laplace approximation via the INLA package (<https://www.r-inla.org>). Additionally, extends the GAM-like model class to more general nonlinear predictor expressions, and implements a log Gaussian Cox process likelihood for modeling univariate and spatial point processes based on ecological survey data. Model components are specified with general inputs and mapping methods to the latent variables, and the predictors are specified via general R expressions, with separate expressions for each observation likelihood model in multi-likelihood models. A prediction method based on fast Monte Carlo sampling allows posterior prediction of general expressions of the latent variables. Ecology-focused introduction in Bachl, Lindgren, Borchers, and Illian (2019) <doi:10.1111/2041-210X.13168>.

Cites work

• inlabru: an R package for Bayesian spatial modelling from ecological survey data

Cited In (6)

• bmstdr
• intSDM
• PointedSDMs
• Posterior concentration and fast convergence rates for generalized Bayesian learning
• Non-homogeneous Poisson process intensity modeling and estimation using measure transport
• Estimating animal utilization distributions from multiple data types: a joint spatiotemporal point process framework

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