spOccupancy
swMATH40603CRANspOccupancyMaRDI QIDQ56303FDOQ56303
Single-Species, Multi-Species, and Integrated Spatial Occupancy Models
Jeffrey Doser, Andrew O. Finley
Last update: 1 November 2023
Copyright license: GNU General Public License
Software version identifier: 0.6.1, 0.1.2, 0.1.3, 0.2.0, 0.2.1, 0.3.0, 0.3.1, 0.3.2, 0.4.0, 0.5.0, 0.5.1, 0.5.2, 0.6.0, 0.7.0, 0.7.1, 0.7.2
Source code repository: https://github.com/cran/spOccupancy
Fits single-species, multi-species, and integrated non-spatial and spatial occupancy models using Markov Chain Monte Carlo (MCMC). Models are fit using Polya-Gamma data augmentation detailed in Polson, Scott, and Windle (2013) <doi:10.1080/01621459.2013.829001>. Spatial models are fit using either Gaussian processes or Nearest Neighbor Gaussian Processes (NNGP) for large spatial datasets. Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2020) <arXiv:2001.09111>. Provides functionality for data integration of multiple single-species occupancy data sets using a joint likelihood framework. Details on data integration are given in Miller, Pacifici, Sanderlin, and Reich (2019) <doi:10.1111/2041-210X.13110>. Details on single-species and multi-species models are found in MacKenzie, Nichols, Lachman, Droege, Royle, and Langtimm (2002) <doi:10.1890/0012-9658(2002)083[2248:ESORWD]2.0.CO;2> and Dorazio and Royle <doi:10.1198/016214505000000015>, respectively.
- Bayesian Inference for Logistic Models Using Pólya–Gamma Latent Variables
- Hierarchical Nearest-Neighbor Gaussian Process Models for Large Geostatistical Datasets
- The recent past and promising future for data integration methods to estimate species’ distributions
- ESTIMATING SITE OCCUPANCY RATES WHEN DETECTION PROBABILITIES ARE LESS THAN ONE
- Estimating Size and Composition of Biological Communities by Modeling the Occurrence of Species
- spNNGP R package for Nearest Neighbor Gaussian Process models
This page was built for software: spOccupancy
