DDD
Diversity-Dependent Diversification
Bart Haegeman, Rampal S. Etienne
Last update: 10 July 2023
Copyright license: GNU General Public License, version 3.0
Software version identifier: 5.2.1, 0.2, 0.3, 0.4, 1.1, 1.2, 1.3, 1.4, 1.5, 1.7, 1.8, 1.9, 1.10, 1.11, 2.0, 2.1, 2.2, 2.3, 2.4, 2.5, 2.6, 2.7, 3.0, 3.1, 3.2, 3.3, 3.4, 3.5, 3.6, 3.7, 3.8.1, 3.9, 4.0, 4.1, 4.2, 4.3, 4.4.1, 4.4, 5.0, 5.2.2
Implements maximum likelihood and bootstrap methods based on the diversity-dependent birth-death process to test whether speciation or extinction are diversity-dependent, under various models including various types of key innovations. See Etienne et al. 2012, Proc. Roy. Soc. B 279: 1300-1309, <doi:10.1098/rspb.2011.1439>, Etienne & Haegeman 2012, Am. Nat. 180: E75-E89, <doi:10.1086/667574>, Etienne et al. 2016. Meth. Ecol. Evol. 7: 1092-1099, <doi:10.1111/2041-210X.12565> and Laudanno et al. 2021. Syst. Biol. 70: 389–407, <doi:10.1093/sysbio/syaa048>. Also contains functions to simulate the diversity-dependent process.
- Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record
- A Conceptual and Statistical Framework for Adaptive Radiations with a Key Role for Diversity Dependence
- How reliably can we infer diversity‐dependent diversification from phylogenies?
- Detecting Lineage-Specific Shifts in Diversification: A Proper Likelihood Approach
Related Items (7)
This page was built for software: DDD
