scistreer

Maximum-Likelihood Perfect Phylogeny Inference at Scale

Evan Biederstedt, Yufeng Wu, Teng Gao, Peter Kharchenko

Last update: 15 June 2023

Copyright license: GNU General Public License, version 3.0

Software version identifier: 1.1.0, 1.0.0, 1.0.1, 1.2.0

Description

Fast maximum-likelihood phylogeny inference from noisy single-cell data using the 'ScisTree' algorithm by Yufeng Wu (2019) <doi:10.1093/bioinformatics/btz676>. 'scistreer' provides an 'R' interface and improves speed via 'Rcpp' and 'RcppParallel', making the method applicable to massive single-cell datasets (>10,000 cells).

Cites work

Accurate and efficient cell lineage tree inference from noisy single cell data: the maximum likelihood perfect phylogeny approach

Cited In (1)

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