NACHO

NanoString Quality Control Dashboard

Mickaël Canouil, Gerard Bouland, Roderick C Slieker

Last update: 12 January 2024

Copyright license: GNU General Public License, version 3.0

Software version identifier: 2.0.4, 0.5.5, 0.5.6, 0.6.0, 0.6.1, 1.0.0, 1.0.1, 1.0.2, 1.1.0, 2.0.0, 2.0.1, 2.0.2, 2.0.5, 2.0.6

Description

NanoString nCounter data are gene expression assays where there is no need for the use of enzymes or amplification protocols and work with fluorescent barcodes (Geiss et al. (2018) <doi:10.1038/nbt1385>). Each barcode is assigned a messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its target can be counted. As a result each count of a specific barcode represents the presence of its target mRNA/miRNA. 'NACHO' (NAnoString quality Control dasHbOard) is able to analyse the exported NanoString nCounter data and facilitates the user in performing a quality control. 'NACHO' does this by visualising quality control metrics, expression of control genes, principal components and sample specific size factors in an interactive web application.

Cites work

Direct multiplexed measurement of gene expression with color-coded probe pairs

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