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Assess the Diagnostic Power of Genomic Marker Combinations

Oksana Vernygora, Julian Dupuis, Kim Vertacnik

Last update: 20 February 2024

Copyright license: MIT license, File License

Software version identifier: 2.1.0, 2.1.1

Description

Population genetics package for designing diagnostic panels. Candidate markers, marker combinations, and different panel sizes are assessed for how well they can predict the source population of known samples. Requires a genotype file of candidate markers in STRUCTURE format. Methods for population cross-validation are described in Jombart (2008) <doi:10.1093/bioinformatics/btn129>.

Cites work

• adegenet: a R package for the multivariate analysis of genetic markers

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