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Fitting Shared Atoms Nested Models via Variational Bayes

Francesco D'Angelo, Laura D'Angelo

Last update: 10 October 2023

Copyright license: MIT license, File License

Software version identifier: 0.1.0

Description

An efficient tool for fitting the nested common and shared atoms models using variational Bayes approximate inference for fast computation. Specifically, the package implements the common atoms model (Denti et al., 2023), its finite version (D'Angelo et al., 2023), and a hybrid finite-infinite model. All models use Gaussian mixtures with a normal-inverse-gamma prior distribution on the parameters. Additional functions are provided to help analyze the results of the fitting procedure. References: Denti, Camerlenghi, Guindani, Mira (2023) <doi:10.1080/01621459.2021.1933499>, D’Angelo, Canale, Yu, Guindani (2023) <doi:10.1111/biom.13626>.

Cites work

• A Common Atoms Model for the Bayesian Nonparametric Analysis of Nested Data
• Bayesian Nonparametric Analysis for the Detection of Spikes in Noisy Calcium Imaging Data

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