countsplit

CRANcountsplitMaRDI QIDQ5982738

Splitting a Count Matrix into Independent Folds

Anna Neufeld

Last update: 24 August 2023

Software version identifier: 4.0.0

Copyright license: MIT license, File License

Description

Implements the count splitting methodology from Neufeld et al. (2022) <doi:10.1093/biostatistics/kxac047> and Neufeld et al. (2023) <arXiv:2307.12985>. Intended for turning a matrix of single-cell RNA sequencing counts, or similar count datasets, into independent folds that can be used for training/testing or cross validation. Assumes that the entries in the matrix are from a Poisson or a negative binomial distribution.

Cites work

• Inference after latent variable estimation for single-cell RNA sequencing data
• Negative binomial count splitting for single-cell RNA sequencing data