funkycells

CRANfunkycellsMaRDI QIDQ5983237FDOQ5983237

Functional Data Analysis for Multiplexed Cell Images

Gregory Rice, Jack D. Hywood, Jeremy Vanderdoes

Last update: 9 August 2023

Copyright license: GNU General Public License

Software version identifier: 1.1.1

Compare variables of interest between (potentially large numbers of) spatial interactions and meta-variables. Spatial variables are summarized using K, or other, functions, and projected for use in a modified random forest model. The model allows comparison of functional and non-functional variables to each other and to noise, giving statistical significance to the results. Included are preparation, modeling, and interpreting tools along with example datasets, as described in VanderDoes et al., (2023) <doi:10.1101/2023.07.18.549619>.

Cites work

Using random forests to uncover the predictive power of distance–varying cell interactions in tumor microenvironments

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