GB5mcPred

CRANGB5mcPredMaRDI QIDQ5983587FDOQ5983587

Gradient Boosting Algorithm for Predicting Methylation States

Dwijesh Chandra Mishra, M.D. Yeasin, Dipro Sinha, Tanwy Dasmandal, Sunil Archak

Last update: 11 July 2023

Copyright license: GNU General Public License, version 3.0

Software version identifier: 0.1.0

Description

DNA methylation of 5-methylcytosine (5mC) is the result of a multi-step, enzyme-dependent process. Predicting these sites in-vitro is laborious, time consuming as well as costly. This ' Gb5mC-Pred ' package is an in-silico pipeline for predicting DNA sequences containing the 5mC sites. It uses a machine learning approach which uses Stochastic Gradient Boosting approach for prediction of the sequences with 5mC sites. This package has been developed by using the concept of Navarez and Roxas (2022) <doi:10.1109/TCBB.2021.3082184>.

Cites work

• An Extensive Examination of Discovering 5-Methylcytosine Sites in Genome-Wide DNA Promoters Using Machine Learning Based Approaches

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