tmbstan

MCMC Sampling from 'TMB' Model Object using 'Stan'

Last update: 26 August 2023

Copyright license: GNU General Public License

Software version identifier: 1.0.9, 1.0.0, 1.0.1, 1.0.2, 1.0.3, 1.0.4, 1.0.7, 1.0.91

Description

Enables all 'rstan' functionality for a 'TMB' model object, in particular MCMC sampling and chain visualization. Sampling can be performed with or without Laplace approximation for the random effects. This is demonstrated in Monnahan & Kristensen (2018) <doi:10.1371/journal.pone.0197954>.

Cites work

No-U-turn sampling for fast Bayesian inference in ADMB and TMB: Introducing the adnuts and tmbstan R packages

Cited In (1)

hmmTMB

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