spatialTIME

Spatial Analysis of Vectra Immunoflourescent Data

Jordan Creed, Christopher Wilson, Ram Thapa, Alex Soupir, Oscar Ospina, Julia Wrobel

Last update: 19 December 2023

Copyright license: MIT license, File License

Software version identifier: 1.3.3-3, 1.0.0, 1.1.0, 1.2.0, 1.2.1, 1.2.2, 1.3.4-2

Description

Visualization and analysis of Vectra Immunoflourescent data. Options for calculating both the univariate and bivariate Ripley's K are included. Calculations are performed using a permutation-based approach presented by Wilson et al. <doi:10.1101/2021.04.27.21256104>.

Cites work

Statistical framework for studying the spatial architecture of the tumor immune microenvironment