idiogramFISH

CRANidiogramFISHMaRDI QIDQ64822FDOQ64822

Shiny App. Idiograms with Marks and Karyotype Indices

Fernando Roa

Last update: 22 August 2023

Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0

Software version identifier: 2.0.10, 2.0.11, 1.0.0, 1.2.1, 1.5.1, 1.6.1, 1.6.3, 1.7.1, 1.8.1, 1.8.3, 1.9.1, 1.11.1, 1.12.1, 1.14.2, 1.14.7, 1.14.11, 1.15.1, 1.15.3, 1.16.1, 1.16.6, 1.16.7, 1.16.8, 2.0.0, 2.0.2, 2.0.3, 2.0.4, 2.0.5, 2.0.6, 2.0.8, 2.0.9, 2.0.12, 2.0.13

Description

Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames for chromosome data and optionally mark data. Two styles of chromosomes can be used: without or with visible chromatids. Supports micrometers, cM and Mb or any unit. Three styles of centromeres are available: triangle, rounded and inProtein; and six styles of marks are available: square (squareLeft), dots, cM (cMLeft), cenStyle, upArrow (downArrow), exProtein (inProtein); its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).

Cites work

• NOMENCLATURE FOR CENTROMERIC POSITION ON CHROMOSOMES
• Chromosomal Evolution in the Genus Brachyscome (Asteraceae, Astereae): Statistical Tests Regarding Correlation Between Changes in Karyotype and Habit Using Phylogenetic Information
• A NEW METHOD FOR ESTIMATING KARYOTYPE ASYMMETRY

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