autothresholdr

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An R Port of the 'ImageJ' Plugin 'Auto Threshold'

Rory Nolan

Last update: 13 December 2023

Copyright license: GNU General Public License, version 3.0

Software version identifier: 1.4.1, 0.2.0, 0.4.0, 0.5.0, 0.6.0, 1.1.0, 1.1.1, 1.1.2, 1.2.0, 1.2.1, 1.3.0, 1.3.1, 1.3.2, 1.3.3, 1.3.4, 1.3.5, 1.3.6, 1.3.7, 1.3.9, 1.3.10, 1.3.11, 1.3.12, 1.4.0, 1.4.2

Description

Algorithms for automatically finding appropriate thresholds for numerical data, with special functions for thresholding images. Provides the 'ImageJ' 'Auto Threshold' plugin functionality to R users. See <https://imagej.net/plugins/auto-threshold> and Landini et al. (2017) <doi:10.1111/jmi.12474>.

Cites work

• Automatic thresholding from the gradients of region boundaries

Cited In (4)

• coveR2
• detrendr
• nandb
• hemispheR

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