SeuratObject
CRANSeuratObjectMaRDI QIDQ73885
Data Structures for Single Cell Data
Paul J Hoffman, Andrew Butler, Tim Stuart, Rahul Satija, Yuhan Hao, Austin Hartman, Gesmira Molla
Last update: 17 November 2023
Software version identifier: 4.1.3, 4.0.0, 4.0.1, 4.0.2, 4.0.3, 4.0.4, 4.1.0, 4.1.1, 4.1.2, 4.1.4, 5.0.0, 5.0.1
Copyright license: MIT license, File License
Defines S4 classes for single-cell genomic data and associated information, such as dimensionality reduction embeddings, nearest-neighbor graphs, and spatially-resolved coordinates. Provides data access methods and R-native hooks to ensure the Seurat object is familiar to other R users. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for more details.
- Comprehensive Integration of Single-Cell Data
- Spatial reconstruction of single-cell gene expression data
- Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
- Integrated analysis of multimodal single-cell data
- Dictionary learning for integrative, multimodal, and scalable single-cell analysis
